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  <meta name="description" content="nf-core/cageseq: CAGE-seq pipeline">
  <title>nf-core/cageseq Pipeline Report</title>
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<img src="cid:nfcorepipelinelogo">

<h1>nf-core/cageseq v${version}</h1>
<h2>Run Name: $runName</h2>

<% if (!success){
    out << """
    <div style="color: #a94442; background-color: #f2dede; border-color: #ebccd1; padding: 15px; margin-bottom: 20px; border: 1px solid transparent; border-radius: 4px;">
        <h4 style="margin-top:0; color: inherit;">nf-core/cageseq execution completed unsuccessfully!</h4>
        <p>The exit status of the task that caused the workflow execution to fail was: <code>$exitStatus</code>.</p>
        <p>The full error message was:</p>
        <pre style="white-space: pre-wrap; overflow: visible; margin-bottom: 0;">${errorReport}</pre>
    </div>
    """
} else {
    out << """
    <div style="color: #3c763d; background-color: #dff0d8; border-color: #d6e9c6; padding: 15px; margin-bottom: 20px; border: 1px solid transparent; border-radius: 4px;">
        nf-core/cageseq execution completed successfully!
    </div>
    """
}
%>

<p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p>
<p>The command used to launch the workflow was as follows:</p>
<pre style="white-space: pre-wrap; overflow: visible; background-color: #ededed; padding: 15px; border-radius: 4px; margin-bottom:30px;">$commandLine</pre>

<h3>Pipeline Configuration:</h3>
<table style="width:100%; max-width:100%; border-spacing: 0; border-collapse: collapse; border:0; margin-bottom: 30px;">
    <tbody style="border-bottom: 1px solid #ddd;">
        <% out << summary.collect{ k,v -> "<tr><th style='text-align:left; padding: 8px 0; line-height: 1.42857143; vertical-align: top; border-top: 1px solid #ddd;'>$k</th><td style='text-align:left; padding: 8px; line-height: 1.42857143; vertical-align: top; border-top: 1px solid #ddd;'><pre style='white-space: pre-wrap; overflow: visible;'>$v</pre></td></tr>" }.join("\n") %>
    </tbody>
</table>

<p>nf-core/cageseq</p>
<p><a href="https://github.com/nf-core/cageseq">https://github.com/nf-core/cageseq</a></p>

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